After switching to XMonad, I still couldn't get MATLAB to work properly
The fix is to add the line
import XMonad.Hooks.SetWMName
at the top of xmonad.hs, and then
startupHook = setWMName "LG3D"
under the defaultConfig section of xmonad.hs
http://www.haskell.org/haskellwiki/Xmonad/Frequently_asked_questions
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